CDS

Accession Number TCMCG057C44034
gbkey CDS
Protein Id XP_018447637.1
Location complement(join(6166490..6166603,6166701..6166850,6166938..6167039,6167135..6167221,6167307..6167372,6167582..6167692,6167799..6167858,6167959..6168012,6168105..6168515))
Gene LOC108819145
GeneID 108819145
Organism Raphanus sativus

Protein

Length 384aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018592135.1
Definition PREDICTED: nuclear pore complex protein NUP54 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category UY
Description Nucleoporin complex subunit 54
KEGG_TC 1.I.1
KEGG_Module M00427        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14308        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0005198        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005643        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006606        [VIEW IN EMBL-EBI]
GO:0006607        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0006997        [VIEW IN EMBL-EBI]
GO:0006999        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0017038        [VIEW IN EMBL-EBI]
GO:0017056        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0033365        [VIEW IN EMBL-EBI]
GO:0034504        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0036228        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044613        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051170        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072594        [VIEW IN EMBL-EBI]
GO:0072657        [VIEW IN EMBL-EBI]
GO:0090435        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTTCGGCACTCCGTCTTCCTCGCCGGCGTTCGGAACTCCGTCCTCCACGCCGATGTTCGGCTCGTCTTCATCCCCCGCCTTCGGCACTCCTCCGCCGTCGATGTTCGGTACGCCGTCATCCACGCCTGCCTTCGGTACACCGTCGTCCACGCCGGCGTTCGGTACCCCGTCGACATCTTCCTTCGCCTCCGGAGGATTCGGCACCTCACTTTTCTCCACTCCGTTCTCATCCCAGCAGCAGCAACAACAGCAGCAGCAGCAGACCTCGCCGTTCCAGCAACAACCGGCGGCATCTTCTGGCTTTGGTTTTCAGTCGCCGTTCAACACGATGCAGCAGACGCCGCAATTGACTACTCAGATGGCTCCCGTTGCTCCGATTCCTTTCTCCCTCGCCGATCGTGATATCCAGGCTATCGTCGAAGCGTATAAGGAAGATCCGACGAATCCTAAGTATGCGTTTAAGCATCTTTTGTTCAGTGTGACTGAACAGCAGTACCGTGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCGGAGGCCATGAGCAAACTTGAAGGCATGGATTCATCAGAAAGAGAGCGCCTATGGCCTCAGCTTGTGCAAGGTTTTAAAGATCTTTCTCAGCGCCTTAAGCTACAAGATGAAGTTCTCGTATCAGATAGGGAAAGAATCAAAACTACGCAGAGCAATGTTAAAATGCTTCAGAGACACTTGCAAGCACATACCTTTCCATCTATTGAAAGGTTAAGACAGAAGGAGCAGAATCTTCAAAGACGCATGTTGAGGGTGATGAGGATAGTAGAGGGCTTAGAGGGGAAGGGTTTCCGGTTACCCTTGACAAAAGGAGAGGCCGAACTGAGTGAGAAGCTAACTGGAATAACAAGACAGGTGAAAGGTCCTGGAGCAGAGCTTTCAAGGAGGGTGCAAAGTCTGCAGACAATATGTCGCGCTCAAGCAAATTCCTTTTCTGCGGGTAGTTCCATTTATCTCCCGGGTTCTACTAAAATAGACGAGCAGAGCCTGGTTGATATGCAGGAGGTATTACAACAGGAGACAGAAGCAATAGGAAGGCTTGGGAACGTATTGAAGCGAGACATGAGGGATATGGAAATCATGGTGGCCGAAGATACAGAAATGACCGAGGACACGTAG
Protein:  
MFGTPSSSPAFGTPSSTPMFGSSSSPAFGTPPPSMFGTPSSTPAFGTPSSTPAFGTPSTSSFASGGFGTSLFSTPFSSQQQQQQQQQQTSPFQQQPAASSGFGFQSPFNTMQQTPQLTTQMAPVAPIPFSLADRDIQAIVEAYKEDPTNPKYAFKHLLFSVTEQQYRVKPAAVSDIMWAEAMSKLEGMDSSERERLWPQLVQGFKDLSQRLKLQDEVLVSDRERIKTTQSNVKMLQRHLQAHTFPSIERLRQKEQNLQRRMLRVMRIVEGLEGKGFRLPLTKGEAELSEKLTGITRQVKGPGAELSRRVQSLQTICRAQANSFSAGSSIYLPGSTKIDEQSLVDMQEVLQQETEAIGRLGNVLKRDMRDMEIMVAEDTEMTEDT